PAPERS PUBLISHED

  1. Garg, V.; Dudchenko, O.; Wang, J.; Khan, A. W.; Gupta, S.; Kaur, P.; Han, K.; Saxena, R. K.; Kale, S. M.; Pham, M.; Yu, J.; Chitikineni, A.; Zhang, Z.; Fan, G.; Lui, C.; Valluri, V.; Meng, F.; Bhandari, A.; Liu, X.; Yang, T.; Chen, H.; Valliyodan, B.; Roorkiwal, M.; Shi, C.; Bin Yang, H.; Durand, N. C.; Pandey, M. K.; Li, G.; Barmukh, R.; Wang, X.; Chen, X.; Ming Lam, H.; Jiang, H.; Zong, X.; Liang, X.; Liu, X.; Liao, B.; Guo, B.; Jackson, S.; Nguyen, H. T.; Zhuang, W.; Shubo, W.; Wang, X.; Lieberman Aiden, E.; Bennetzen, J. L.; Varshney, R. K. Chromosome-Length Genome Assemblies of Six Legume Species Provide Insights into Genome Organization, Evolution, and Agronomic Traits for Crop Improvement. Journal of Advanced Research 2021. https://doi.org/10.1016/j.jare.2021.10.009.

  2. Lamb, S.; Taylor, A. M.; Hughes, T. A.; McMillan, B. R.; Larsen, R. T.; Khan, R.; Weisz, D.; Dudchenko, O.; Aiden, E. L.; Frandsen, P. B. De Novo Chromosome-Length Assembly of the Mule Deer (Odocoileus Hemionus) Genome; 2021; p 2021.08.12.456132. https://doi.org/10.1101/2021.08.12.456132.

  3. Van Dam, M. H.; Cabras, A. A.; Henderson, J. B.; Rominger, A. J.; Pérez Estrada, C.; Omer, A. D.; Dudchenko, O.; Lieberman Aiden, E.; Lam, A. W. The Easter Egg Weevil (Pachyrhynchus) Genome Reveals Syntenic Patterns in Coleoptera across 200 Million Years of Evolution. PLoS Genet 2021, 17 (8), e1009745. https://doi.org/10.1371/journal.pgen.1009745.

  4. Robinson, J. A.; Bowie, R. C. K.; Dudchenko, O.; Aiden, E. L.; Hendrickson, S. L.; Steiner, C. C.; Ryder, O. A.; Mindell, D. P.; Wall, J. D. Genome-Wide Diversity in the California Condor Tracks Its Prehistoric Abundance and Decline. Current Biology 2021, 31 (13), 2939-2946.e5. https://doi.org/10.1016/j.cub.2021.04.035.

  5. Hoencamp, C.; Dudchenko, O.; Elbatsh, A. M. O.; Brahmachari, S.; Raaijmakers, J. A.; van Schaik, T.; Sedeño Cacciatore, Á.; Contessoto, V. G.; van Heesbeen, R. G. H. P.; van den Broek, B.; Mhaskar, A. N.; Teunissen, H.; St Hilaire, B. G.; Weisz, D.; Omer, A. D.; Pham, M.; Colaric, Z.; Yang, Z.; Rao, S. S. P.; Mitra, N.; Lui, C.; Yao, W.; Khan, R.; Moroz, L. L.; Kohn, A.; St. Leger, J.; Mena, A.; Holcroft, K.; Gambetta, M. C.; Lim, F.; Farley, E.; Stein, N.; Haddad, A.; Chauss, D.; Mutlu, A. S.; Wang, M. C.; Young, N. D.; Hildebrandt, E.; Cheng, H. H.; Knight, C. J.; Burnham, T. L. U.; Hovel, K. A.; Beel, A. J.; Mattei, P.-J.; Kornberg, R. D.; Warren, W. C.; Cary, G.; Gómez-Skarmeta, J. L.; Hinman, V.; Lindblad-Toh, K.; Di Palma, F.; Maeshima, K.; Multani, A. S.; Pathak, S.; Nel-Themaat, L.; Behringer, R. R.; Kaur, P.; Medema, R. H.; van Steensel, B.; de Wit, E.; Onuchic, J. N.; Di Pierro, M.; Lieberman Aiden, E.; Rowland, B. D. 3D Genomics across the Tree of Life Reveals Condensin II as a Determinant of Architecture Type. Science 2021, 372 (6545), 984–989. https://doi.org/10.1126/science.abe2218.

  6. Young, N. D.; Stroehlein, A. J.; Kinkar, L.; Wang, T.; Sohn, W.-M.; Chang, B. C. H.; Kaur, P.; Weisz, D.; Dudchenko, O.; Aiden, E. L.; Korhonen, P. K.; Gasser, R. B. High-Quality Reference Genome for Clonorchis Sinensis. Genomics 2021, 113 (3), 1605–1615. https://doi.org/10.1016/j.ygeno.2021.03.001.

  7. Colella, J. P.; Tigano, A.; Dudchenko, O.; Omer, A. D.; Khan, R.; Bochkov, I. D.; Aiden, E. L.; MacManes, M. D. Limited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice. Journal of Heredity 2021, 112 (3), 286–302. https://doi.org/10.1093/jhered/esab009.

  8. Jones, B. M.; Rubin, B. E. R.; Dudchenko, O.; Kapheim, K. M.; Wyman, E. S.; Hilaire, B. G. S.; Liu, W.; Parsons, L. R.; Jackson, S. R.; Goodwin, K.; Davidson, S. M.; Kingwell, C. J.; Webb, A. E.; Otárola, M. F.; Pham, M.; Omer, A. D.; Weisz, D.; Schraiber, J.; Villanea, F.; Wcislo, W. T.; Paxton, R. J.; Hunt, B. G.; Aiden, E. L.; Kocher, S. D. Convergent Selection on Juvenile Hormone Signaling Is Associated with the Evolution of Eusociality in Bees; 2021; p 2021.04.14.439731. https://doi.org/10.1101/2021.04.14.439731.

  9. Edwards, R. J.; Field, M. A.; Ferguson, J. M.; Dudchenko, O.; Keilwagen, J.; Rosen, B. D.; Johnson, G. S.; Rice, E. S.; Hillier, L. D.; Hammond, J. M.; Towarnicki, S. G.; Omer, A.; Khan, R.; Skvortsova, K.; Bogdanovic, O.; Zammit, R. A.; Aiden, E. L.; Warren, W. C.; Ballard, J. W. O. Chromosome-Length Genome Assembly and Structural Variations of the Primal Basenji Dog (Canis Lupus Familiaris) Genome. BMC Genomics 2021, 22 (1), 188. https://doi.org/10.1186/s12864-021-07493-6.

  10. Tigano, A.; Khan, R.; Omer, A. D.; Weisz, D.; Dudchenko, O.; Multani, A. S.; Pathak, S.; Behringer, R. R.; Aiden, E. L.; Fisher, H.; MacManes, M. D. Chromosome Size Affects Sequence Divergence between Species through the Interplay of Recombination and Selection; 2021; p 2021.01.15.426870. https://doi.org/10.1101/2021.01.15.426870.

  11. Kaur, P.; Lui, C.; Dudchenko, O.; Nandety, R. S.; Hurgobin, B.; Pham, M.; Lieberman Aiden, E.; Wen, J.; Mysore, K. S. Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago Truncatula Cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly. International Journal of Molecular Sciences 2021, 22 (9), 4326. https://doi.org/10.3390/ijms22094326.

  12. Yadav, S.; Dudchenko, O.; Esvaran, M.; Rosen, B. D.; Field, M. A.; Skvortsova, K.; Edwards, R. J.; Gopalakrishnan, S.; Keilwagen, J.; Cochran, B. J.; Manandhar, B.; Bucknall, M.; Bustamante, S.; Rasmussen, J. A.; Melvin, R. G.; Omer, A.; Colaric, Z.; Chan, E. K. F.; Minoche, A. E.; Smith, T. P. L.; Gilbert, M. T. P.; Bogdanovic, O.; Zammit, R. A.; Thomas, T.; Aiden, E. L.; Ballard, J. W. O. Desert Dingo (Canis Lupus Dingo) Genome Provides Insights into Their Role in the Australian Ecosystem; 2020; p 2020.11.15.384057. https://doi.org/10.1101/2020.11.15.384057.

  13. Colella, J. P.; Tigano, A.; Dudchenko, O.; Omer, A. D.; Khan, R.; Bochkov, I. D.; Aiden, E. L.; MacManes, M. D. Multiple Evolutionary Pathways to Achieve Thermal Adaptation in Small Mammals. bioRxiv 2020, 2020.06.29.178392. https://doi.org/10.1101/2020.06.29.178392.

  14. Humble, E.; Dobrynin, P.; Senn, H.; Chuven, J.; Scott, A. F.; Mohr, D. W.; Dudchenko, O.; Omer, A. D.; Colaric, Z.; Lieberman Aiden, E.; Al Dhaheri, S. S.; Wildt, D.; Oliaji, S.; Tamazian, G.; Pukazhenthi, B.; Ogden, R.; Koepfli, K.-P. Chromosomal-Level Genome Assembly of the Scimitar-Horned Oryx: Insights into Diversity and Demography of a Species Extinct in the Wild. Mol Ecol Resour 2020. https://doi.org/10.1111/1755-0998.13181.

  15. Kenny, N. J.; McCarthy, S. A.; Dudchenko, O.; James, K.; Betteridge, E.; Corton, C.; Dolucan, J.; Mead, D.; Oliver, K.; Omer, A. D.; Pelan, S.; Ryan, Y.; Sims, Y.; Skelton, J.; Smith, M.; Torrance, J.; Weisz, D.; Wipat, A.; Aiden, E. L.; Howe, K.; Williams, S. T. The Gene-Rich Genome of the Scallop Pecten Maximus. Gigascience 2020, 9 (5). https://doi.org/10.1093/gigascience/giaa037.

  16. Field, M. A.; Rosen, B. D.; Dudchenko, O.; Chan, E. K. F.; Minoche, A. E.; Edwards, R. J.; Barton, K.; Lyons, R. J.; Tuipulotu, D. E.; Hayes, V. M.; D. Omer, A.; Colaric, Z.; Keilwagen, J.; Skvortsova, K.; Bogdanovic, O.; Smith, M. A.; Aiden, E. L.; Smith, T. P. L.; Zammit, R. A.; Ballard, J. W. O. Canfam_GSD: De Novo Chromosome-Length Genome Assembly of the German Shepherd Dog (Canis Lupus Familiaris) Using a Combination of Long Reads, Optical Mapping, and Hi-C. Gigascience 2020, 9 (4). https://doi.org/10.1093/gigascience/giaa027.

  17. Mead, D.; Hailer, F.; Chadwick, E.; Portela Miguez, R.; Smith, M.; Corton, C.; Oliver, K.; Skelton, J.; Betteridge, E.; Doulcan, J. D.; Dudchenko, O.; Omer, A.; Weisz, D.; Lieberman Aiden, E.; McCarthy, S.; Howe, K.; Sims, Y.; Torrance, J.; Tracey, A.; Challis, R.; Durbin, R.; Blaxter, M. The Genome Sequence of the Eurasian River Otter, Lutra Lutra Linnaeus 1758. Wellcome Open Res 2020, 5, 33. https://doi.org/10.12688/wellcomeopenres.15722.1.

  18. Mead, D.; Fingland, K.; Cripps, R.; Portela Miguez, R.; Smith, M.; Corton, C.; Oliver, K.; Skelton, J.; Betteridge, E.; Dolucan, J.; Dudchenko, O.; Omer, A. D.; Weisz, D.; Lieberman Aiden, E.; Fedrigo, O.; Mountcastle, J.; Jarvis, E.; McCarthy, S. A.; Sims, Y.; Torrance, J.; Tracey, A.; Howe, K.; Challis, R.; Durbin, R.; Blaxter, M. The Genome Sequence of the Eurasian Red Squirrel, Sciurus Vulgaris Linnaeus 1758. Wellcome Open Research 2020, 5, 18. https://doi.org/10.12688/wellcomeopenres.15679.1.

  19. Bertioli, D. J.; Jenkins, J.; Clevenger, J.; Dudchenko, O.; Gao, D.; Seijo, G.; Leal-Bertioli, S. C. M.; Ren, L.; Farmer, A. D.; Pandey, M. K.; Samoluk, S. S.; Abernathy, B.; Agarwal, G.; Ballén-Taborda, C.; Cameron, C.; Campbell, J.; Chavarro, C.; Chitikineni, A.; Chu, Y.; Dash, S.; Baidouri, M. E.; Guo, B.; Huang, W.; Kim, K. D.; Korani, W.; Lanciano, S.; Lui, C. G.; Mirouze, M.; Moretzsohn, M. C.; Pham, M.; Shin, J. H.; Shirasawa, K.; Sinharoy, S.; Sreedasyam, A.; Weeks, N. T.; Zhang, X.; Zheng, Z.; Sun, Z.; Froenicke, L.; Aiden, E. L.; Michelmore, R.; Varshney, R. K.; Holbrook, C. C.; Cannon, E. K. S.; Scheffler, B. E.; Grimwood, J.; Ozias-Akins, P.; Cannon, S. B.; Jackson, S. A.; Schmutz, J. The Genome Sequence of Segmental Allotetraploid Peanut Arachis Hypogaea. Nat Genet 2019, 51 (5), 877–884. https://doi.org/10.1038/s41588-019-0405-z.

  20. Dudchenko, O.; Pham, M.; Lui, C.; Batra, S. S.; Hoeger, M.; Nyquist, S. K.; Durand, N. C.; Shamim, M. S.; Machol, I.; Erskine, W.; Aiden, E. L.; Kaur, P. Hi-C Yields Chromosome-Length Scaffolds for a Legume Genome, Trifolium Subterraneum. bioRxiv 2018, 473553. https://doi.org/10.1101/473553.

  21. Matthews, B. J.; Dudchenko, O.; Kingan, S. B.; Koren, S.; Antoshechkin, I.; Crawford, J. E.; Glassford, W. J.; Herre, M.; Redmond, S. N.; Rose, N. H.; Weedall, G. D.; Wu, Y.; Batra, S. S.; Brito-Sierra, C. A.; Buckingham, S. D.; Campbell, C. L.; Chan, S.; Cox, E.; Evans, B. R.; Fansiri, T.; Filipović, I.; Fontaine, A.; Gloria-Soria, A.; Hall, R.; Joardar, V. S.; Jones, A. K.; Kay, R. G. G.; Kodali, V. K.; Lee, J.; Lycett, G. J.; Mitchell, S. N.; Muehling, J.; Murphy, M. R.; Omer, A. D.; Partridge, F. A.; Peluso, P.; Aiden, A. P.; Ramasamy, V.; Rašić, G.; Roy, S.; Saavedra-Rodriguez, K.; Sharan, S.; Sharma, A.; Smith, M. L.; Turner, J.; Weakley, A. M.; Zhao, Z.; Akbari, O. S.; Black, W. C.; Cao, H.; Darby, A. C.; Hill, C. A.; Johnston, J. S.; Murphy, T. D.; Raikhel, A. S.; Sattelle, D. B.; Sharakhov, I. V.; White, B. J.; Zhao, L.; Aiden, E. L.; Mann, R. S.; Lambrechts, L.; Powell, J. R.; Sharakhova, M. V.; Tu, Z.; Robertson, H. M.; McBride, C. S.; Hastie, A. R.; Korlach, J.; Neafsey, D. E.; Phillippy, A. M.; Vosshall, L. B. Improved Reference Genome of Aedes Aegypti Informs Arbovirus Vector Control. Nature 2018, 563 (7732), 501–507. https://doi.org/10.1038/s41586-018-0692-z.

  22. Dudchenko, O.; Shamim, M. S.; Batra, S. S.; Durand, N. C.; Musial, N. T.; Mostofa, R.; Pham, M.; Hilaire, B. G. S.; Yao, W.; Stamenova, E.; Hoeger, M.; Nyquist, S. K.; Korchina, V.; Pletch, K.; Flanagan, J. P.; Tomaszewicz, A.; McAloose, D.; Estrada, C. P.; Novak, B. J.; Omer, A. D.; Aiden, E. L. The Juicebox Assembly Tools Module Facilitates de Novo Assembly of Mammalian Genomes with Chromosome-Length Scaffolds for under $1000. bioRxiv 2018, 254797. https://doi.org/10.1101/254797.

  23. Dudchenko, O.; Batra, S. S.; Omer, A. D.; Nyquist, S. K.; Hoeger, M.; Durand, N. C.; Shamim, M. S.; Machol, I.; Lander, E. S.; Aiden, A. P.; Aiden, E. L. De Novo Assembly of the Aedes Aegypti Genome Using Hi-C Yields Chromosome-Length Scaffolds. Science 2017, 356 (6333), 92–95. https://doi.org/10.1126/science.aal3327

SELECT PAPERS CITING UNPUBLISHED DNA ZOO DATA

  1. Pálsdóttir, A. H. Ancient DNA sexing of walrus bones from Alþingisreitur, Iceland. 15.

  2. Tian, R.; Han, K.; Geng, Y.; Yang, C.; Shi, C.; Thomas, P. B.; Pearce, C.; Moffatt, K.; Ma, S.; Xu, S.; Yang, G.; Zhou, X.; Gladyshev, V. N.; Liu, X.; Fisher, D. O.; Chopin, L. K.; Leiner, N. O.; Baker, A. M.; Fan, G.; Seim, I. A Chromosome-Level Genome of Antechinus Flavipes Provides a Reference for an Australian Marsupial Genus with Male Death after Mating. Molecular Ecology Resources 2022, 22 (2), 740–754. https://doi.org/10.1111/1755-0998.13501.

  3. Reeves, I. M.; Totterdell, J. A.; Barceló, A.; Sandoval-Castillo, J.; Batley, K. C.; Stockin, K. A.; Betty, E. L.; Donnelly, D. M.; Wellard, R.; Beheregaray, L. B.; Möller, L. M. Population Genomic Structure of Killer Whales (Orcinus Orca) in Australian and New Zealand Waters. Marine Mammal Science 2022, 38 (1), 151–174. https://doi.org/10.1111/mms.12851.

  4. Reeves, I. M.; Totterdell, J. A.; Barceló, A.; Sandoval-Castillo, J.; Batley, K. C.; Stockin, K. A.; Betty, E. L.; Donnelly, D. M.; Wellard, R.; Beheregaray, L. B.; Möller, L. M. Population Genomic Structure of Killer Whales (Orcinus Orca) in Australian and New Zealand Waters. Marine Mammal Science 2022, 38 (1), 151–174. https://doi.org/10.1111/mms.12851.

  5. Lan, T.; Leppälä, K.; Tomlin, C.; Talbot, S. L.; Sage, G. K.; Farley, S.; Shideler, R. T.; Bachmann, L.; Wiig, Ø.; Albert, V. A.; Salojärvi, J.; Mailund, T.; Drautz-Moses, D. I.; Schuster, S. C.; Herrera-Estrella, L.; Lindqvist, C. Insights into Bear Evolution from a Pleistocene Polar Bear Genome; 2021; p 2021.12.11.472228. https://doi.org/10.1101/2021.12.11.472228.

  6. Waters, P. D.; Patel, H. R.; Ruiz-Herrera, A.; Álvarez-González, L.; Lister, N. C.; Simakov, O.; Ezaz, T.; Kaur, P.; Frere, C.; Grützner, F.; Georges, A.; Graves, J. A. M. Microchromosomes Are Building Blocks of Bird, Reptile, and Mammal Chromosomes. PNAS 2021, 118 (45). https://doi.org/10.1073/pnas.2112494118.

  7. Cabrera, A. A.; Rey-Iglesia, A.; Louis, M.; Skovrind, M.; Westbury, M. V.; Lorenzen, E. D. How Low Can You Go: Sex Identification from Sequencing Data of Species Lacking Assembled Sex Chromosomes; 2021; p 2021.11.04.467120. https://doi.org/10.1101/2021.11.04.467120.

  8. Sigeman, H.; Sinclair, B.; Hansson, B. FindZX: An Automated Pipeline for Detecting and Visualising Sex Chromosomes Using Whole-Genome Sequencing Data; 2021; p 2021.10.18.464774. https://doi.org/10.1101/2021.10.18.464774.

  9. Li, S.; Zhao, G.; Han, H.; Li, Y.; Li, J.; Wang, J.; Cao, G.; Li, X. Genome Collinearity Analysis Illuminates the Evolution of Donkey Chromosome 1 and Horse Chromosome 5 in Perissodactyls: A Comparative Study. BMC Genomics 2021, 22 (1), 665. https://doi.org/10.1186/s12864-021-07984-6.

  10. Tollis, M.; Ferris, E.; Campbell, M. S.; Harris, V. K.; Rupp, S. M.; Harrison, T. M.; Kiso, W. K.; Schmitt, D. L.; Garner, M. M.; Aktipis, C. A.; Maley, C. C.; Boddy, A. M.; Yandell, M.; Gregg, C.; Schiffman, J. D.; Abegglen, L. M. Elephant Genomes Reveal Accelerated Evolution in Mechanisms Underlying Disease Defenses. Molecular Biology and Evolution 2021, 38 (9), 3606–3620. https://doi.org/10.1093/molbev/msab127.

  11. Dai, Y.; Trigueros, S.; Holland, P. W. H. Compromised Function of the Pancreatic Transcription Factor PDX1 in a Lineage of Desert Rodents. J Mammal Evol 2021, 28 (3), 965–977. https://doi.org/10.1007/s10914-021-09544-x.

  12. Coimbra, R. T. F.; Winter, S.; Kumar, V.; Koepfli, K.-P.; Gooley, R. M.; Dobrynin, P.; Fennessy, J.; Janke, A. Whole-Genome Analysis of Giraffe Supports Four Distinct Species. Current Biology 2021, 31 (13), 2929-2938.e5. https://doi.org/10.1016/j.cub.2021.04.033.

  13. Waters, P. D.; Patel, H. R.; Ruiz-Herrera, A.; Álvarez-González, L.; Lister, N. C.; Simakov, O.; Ezaz, T.; Kaur, P.; Frere, C.; Grützner, F.; Georges, A.; Graves, J. A. M. Microchromosomes Are Building Blocks of Bird, Reptile and Mammal Chromosomes; 2021; p 2021.07.06.451394. https://doi.org/10.1101/2021.07.06.451394.

  14. Driller, M.; Arantes, L. S.; Vilaça, S. T.; Carrasco-Valenzuela, T.; Heeger, F.; Mbedi, S.; Chevallier, D.; Thoisy, B. D.; Mazzoni, C. J. Achieving High-Quality DdRAD-like Reference Catalogs for Non-Model Species: The Power of Overlapping Paired-End Reads; 2021; p 2020.04.03.024331. https://doi.org/10.1101/2020.04.03.024331.

  15. Cheng, R. R.; Dodero-Rojas, E.; Pierro, M. D.; Onuchic, J. N. Evolutionary Differences in the ACE2 Reveals the Molecular Origins of COVID-19 Susceptibility; 2021; p 2021.03.25.437113. https://doi.org/10.1101/2021.03.25.437113.

  16. Liu, J.; Wang, Z.; Li, J.; Xu, L.; Liu, J.; Feng, S.; Guo, C.; Chen, S.; Ren, Z.; Rao, J.; Wei, K.; Chen, Y.; Jarvis, E. D.; Zhang, G.; Zhou, Q. A New Emu Genome Illuminates the Evolution of Genome Configuration and Nuclear Architecture of Avian Chromosomes. Genome Res. 2021, 31 (3), 497–511. https://doi.org/10.1101/gr.271569.120.

  17. Liu, C.; Gao, J.; Cui, X.; Li, Z.; Chen, L.; Yuan, Y.; Zhang, Y.; Mei, L.; Zhao, L.; Cai, D.; Hu, M.; Zhou, B.; Li, Z.; Qin, T.; Si, H.; Li, G.; Lin, Z.; Xu, Y.; Zhu, C.; Yin, Y.; Zhang, C.; Xu, W.; Li, Q.; Wang, K.; Gilbert, M. T. P.; Heller, R.; Wang, W.; Huang, J.; Qiu, Q. A Towering Genome: Experimentally Validated Adaptations to High Blood Pressure and Extreme Stature in the Giraffe. Science Advances 2021. https://doi.org/10.1126/sciadv.abe9459.

  18. Ryzhkova, A.; Taskina, A.; Khabarova, A.; Fishman, V.; Battulin, N. Erythrocytes 3D Genome Organization in Vertebrates. Sci Rep 2021, 11 (1), 4414. https://doi.org/10.1038/s41598-021-83903-9.

  19. Ishino, K.; Hasuwa, H.; Yoshimura, J.; Iwasaki, Y. W.; Nishihara, H.; Seki, N. M.; Hirano, T.; Tsuchiya, M.; Ishizaki, H.; Masuda, H.; Kuramoto, T.; Saito, K.; Sakakibara, Y.; Toyoda, A.; Itoh, T.; Siomi, M. C.; Morishita, S.; Siomi, H. Hamster PIWI Proteins Bind to PiRNAs with Stage-Specific Size Variations during Oocyte Maturation. Nucleic Acids Res 2021, 49 (5), 2700–2720. https://doi.org/10.1093/nar/gkab059.

  20. Zazhytska, M.; Kodra, A.; Hoagland, D. A.; Fullard, J. F.; Shayya, H.; Omer, A.; Firestein, S.; Gong, Q.; Canoll, P. D.; Goldman, J. E.; Roussos, P.; tenOever, B. R.; Overdevest, J. B.; Lomvardas, S. Disruption of Nuclear Architecture as a Cause of COVID-19 Induced Anosmia. bioRxiv 2021, 2021.02.09.430314. https://doi.org/10.1101/2021.02.09.430314.

  21. Tsuchiya, M. T. N.; Dikow, R. B.; Koepfli, K.-P.; Frandsen, P. B.; Rockwood, L. L.; Maldonado, J. E. Whole-Genome Sequencing of Procyonids Reveals Distinct Demographic Histories in Kinkajou (Potos Flavus) and Northern Raccoon (Procyon Lotor). Genome Biology and Evolution 2021, 13 (1), evaa255. https://doi.org/10.1093/gbe/evaa255.

  22. Vilaça, S. T.; Piccinno, R.; Rota-Stabelli, O.; Gabrielli, M.; Benazzo, A.; Matschiner, M.; Soares, L. S.; Bolten, A. B.; Bjorndal, K. A.; Bertorelle, G. Divergence and Hybridization in Sea Turtles: Inferences from Genome Data Show Evidence of Ancient Gene Flow between Species. Molecular Ecology 2021, 30 (23), 6178–6192. https://doi.org/10.1111/mec.16113.

  23. Peart, C. R.; Williams, C.; Pophaly, S. D.; Neely, B. A.; Gulland, F. M. D.; Adams, D. J.; Ng, B. L.; Cheng, W.; Goebel, M. E.; Fedrigo, O.; Haase, B.; Mountcastle, J.; Fungtammasan, A.; Formenti, G.; Collins, J.; Wood, J.; Sims, Y.; Torrance, J.; Tracey, A.; Howe, K.; Rhie, A.; Hoffman, J. I.; Johnson, J.; Jarvis, E. D.; Breen, M.; Wolf, J. B. W. Hi-C Scaffolded Short- and Long-Read Genome Assemblies of the California Sea Lion Are Broadly Consistent for Syntenic Inference across 45 Million Years of Evolution. Molecular Ecology Resources 2021, 21 (7), 2455–2470. https://doi.org/10.1111/1755-0998.13443.