PAPERS PUBLISHED

  1. Wilder, A.P., Dudchenko, O., Curry, C., Korody, M., Turbek, S.P., Daly, M., Misuraca, A., Gaojianyong, W.A.N.G., Khan, R., Weisz, D., Fronczek, J., Aiden, E.L., Houck, M.L., Shier, D.M., Ryder, O.A., Steiner, C.C., 2022. A chromosome-length reference genome for the endangered Pacific pocket mouse reveals recent inbreeding in a historically large population. Genome Biol Evol evac122. https://doi.org/10.1093/gbe/evac122

  2. Mohr, D.W., Gaughran, S.J., Paschall, J., Naguib, A., Pang, A.W.C., Dudchenko, O., Aiden, E.L., Church, D.M., Scott, A.F., 2022. A Chromosome-Length Assembly of the Hawaiian Monk Seal (Neomonachus schauinslandi): A History of “Genetic Purging” and Genomic Stability. Genes (Basel) 13. https://doi.org/10.3390/genes13071270

  3. Garg, G., Kamphuis, L.G., Bayer, P.E., Kaur, P., Dudchenko, O., Taylor, C.M., Frick, K.M., Foley, R.C., Gao, L.-L., Lieberman Aiden, E., Edwards, D., Singh, K.B., 2022. A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits. The Plant Journal n/a. https://doi.org/10.1111/tpj.15885

  4. Brůna, T., Aryal, R., Dudchenko, O., Sargent, D.J., Mead, D., Buti, M., Cavallini, A., Hytönen, T., Andrés, J., Pham, M., Weisz, D., Mascagni, F., Usai, G., Natali, L., Bassil, N., Fernandez, G.E., Lomsadze, A., Armour, M., Olukolu, B., Poorten, T., Britton, C., Davik, J., Ashrafi, H., Aiden, E.L., Borodovsky, M., Worthington, M., 2022. A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. ‘Hillquist’). https://doi.org/10.1101/2022.04.28.489789

  5. Karawita, A.C., Cheng, Y., Chew, K.Y., Challgula, A., Kraus, R., Mueller, R.C., Tong, M.Z.W., Hulme, K.D., Beielefeldt-Ohmann, H., Steele, L.E., Wu, M., Sng, J., Noye, E., Bruxner, T.J., Au, G.G., Lowther, S., Blommaert, J., Suh, A., McCauley, A.J., Kaur, P., Dudchenko, O., Aiden, E., Fedrigo, O., Formenti, G., Mountcastle, J., Chow, W., Martin, F.J., Ogeh, D.N., Thiaud-Nissen, F., Howe, K., Collins, J., Tracey, A., Smith, J., Kuo, R.I., Renfree, M.B., Kimura, T., Sakoda, Y., McDougall, M., Spencer, H.G., Pyne, M., Tolf, C., Waldenström, J., Jarvis, E.D., Baker, M.L., Burt, D.W., Short, K.R., 2022. The swan genome and transcriptome: its not all black and white. bioRxiv 2022.05.02.490350. https://doi.org/10.1101/2022.05.02.490350

  6. Robinson, J.A., Bowie, R.C.K., Dudchenko, O., Aiden, E.L., Hendrickson, S.L., Steiner, C.C., Ryder, O.A., Mindell, D.P., Wall, J.D., 2022. Response to Bakker et al. Current Biology 32, R358–R359. https://doi.org/10.1016/j.cub.2022.03.049

  7. Field, M.A., Yadav, S., Dudchenko, O., Esvaran, M., Rosen, B.D., Skvortsova, K., Edwards, R.J., Keilwagen, J., Cochran, B.J., Manandhar, B., Bustamante, S., Rasmussen, J.A., Melvin, R.G., Chernoff, B., Omer, A., Colaric, Z., Chan, E.K.F., Minoche, A.E., Smith, T.P.L., Gilbert, M.T.P., Bogdanovic, O., Zammit, R.A., Thomas, T., Aiden, E.L., Ballard, J.W.O., 2022. The Australian dingo is an early offshoot of modern breed dogs. Sci Adv 8, eabm5944. https://doi.org/10.1126/sciadv.abm5944

  8. Robledo-Ruiz, D. A.; Gan, H. M.; Kaur, P.; Dudchenko, O.; Weisz, D.; Khan, R.; Lieberman Aiden, E.; Osipova, E.; Hiller, M.; Morales, H. E.; Magrath, M. J. L.; Clarke, R. H.; Sunnucks, P.; Pavlova, A. Chromosome-Length Genome Assembly and Linkage Map of a Critically Endangered Australian Bird: The Helmeted Honeyeater. GigaScience 2022, 11, giac025. https://doi.org/10.1093/gigascience/giac025.

  9. Davik, J.; Røen, D.; Lysøe, E.; Buti, M.; Rossman, S.; Alsheikh, M.; Aiden, E. L.; Dudchenko, O.; Sargent, D. J. A Chromosome-Level Genome Sequence Assembly of the Red Raspberry (Rubus Idaeus L.). PLOS ONE 2022, 17 (3), e0265096. https://doi.org/10.1371/journal.pone.0265096.

  10. Tigano, A.; Khan, R.; Omer, A. D.; Weisz, D.; Dudchenko, O.; Multani, A. S.; Pathak, S.; Behringer, R. R.; Aiden, E. L.; Fisher, H.; MacManes, M. D. Chromosome Size Affects Sequence Divergence between Species through the Interplay of Recombination and Selection. Evolution 2022, n/a (n/a). https://doi.org/10.1111/evo.14467.

  11. Stroehlein, A. J.; Korhonen, P. K.; Lee, V. V.; Ralph, S. A.; Mentink-Kane, M.; You, H.; McManus, D. P.; Tchuenté, L.-A. T.; Stothard, J. R.; Kaur, P.; Dudchenko, O.; Aiden, E. L.; Yang, B.; Yang, H.; Emery, A. M.; Webster, B. L.; Brindley, P. J.; Rollinson, D.; Chang, B. C. H.; Gasser, R. B.; Young, N. D. Chromosome-Level Genome of Schistosoma Haematobium Underpins Genome-Wide Explorations of Molecular Variation. PLOS Pathogens 2022, 18 (2), e1010288. https://doi.org/10.1371/journal.ppat.1010288.

  12. Garg, V.; Dudchenko, O.; Wang, J.; Khan, A. W.; Gupta, S.; Kaur, P.; Han, K.; Saxena, R. K.; Kale, S. M.; Pham, M.; Yu, J.; Chitikineni, A.; Zhang, Z.; Fan, G.; Lui, C.; Valluri, V.; Meng, F.; Bhandari, A.; Liu, X.; Yang, T.; Chen, H.; Valliyodan, B.; Roorkiwal, M.; Shi, C.; Bin Yang, H.; Durand, N. C.; Pandey, M. K.; Li, G.; Barmukh, R.; Wang, X.; Chen, X.; Ming Lam, H.; Jiang, H.; Zong, X.; Liang, X.; Liu, X.; Liao, B.; Guo, B.; Jackson, S.; Nguyen, H. T.; Zhuang, W.; Shubo, W.; Wang, X.; Lieberman Aiden, E.; Bennetzen, J. L.; Varshney, R. K. Chromosome-Length Genome Assemblies of Six Legume Species Provide Insights into Genome Organization, Evolution, and Agronomic Traits for Crop Improvement. Journal of Advanced Research 2021. https://doi.org/10.1016/j.jare.2021.10.009.

  13. Lamb, S.; Taylor, A. M.; Hughes, T. A.; McMillan, B. R.; Larsen, R. T.; Khan, R.; Weisz, D.; Dudchenko, O.; Aiden, E. L.; Frandsen, P. B. De Novo Chromosome-Length Assembly of the Mule Deer (Odocoileus Hemionus) Genome; 2021; p 2021.08.12.456132. https://doi.org/10.1101/2021.08.12.456132.

  14. Van Dam, M. H.; Cabras, A. A.; Henderson, J. B.; Rominger, A. J.; Pérez Estrada, C.; Omer, A. D.; Dudchenko, O.; Lieberman Aiden, E.; Lam, A. W. The Easter Egg Weevil (Pachyrhynchus) Genome Reveals Syntenic Patterns in Coleoptera across 200 Million Years of Evolution. PLoS Genet 2021, 17 (8), e1009745. https://doi.org/10.1371/journal.pgen.1009745.

  15. Robinson, J. A.; Bowie, R. C. K.; Dudchenko, O.; Aiden, E. L.; Hendrickson, S. L.; Steiner, C. C.; Ryder, O. A.; Mindell, D. P.; Wall, J. D. Genome-Wide Diversity in the California Condor Tracks Its Prehistoric Abundance and Decline. Current Biology 2021, 31 (13), 2939-2946.e5. https://doi.org/10.1016/j.cub.2021.04.035.

  16. Hoencamp, C.; Dudchenko, O.; Elbatsh, A. M. O.; Brahmachari, S.; Raaijmakers, J. A.; van Schaik, T.; Sedeño Cacciatore, Á.; Contessoto, V. G.; van Heesbeen, R. G. H. P.; van den Broek, B.; Mhaskar, A. N.; Teunissen, H.; St Hilaire, B. G.; Weisz, D.; Omer, A. D.; Pham, M.; Colaric, Z.; Yang, Z.; Rao, S. S. P.; Mitra, N.; Lui, C.; Yao, W.; Khan, R.; Moroz, L. L.; Kohn, A.; St. Leger, J.; Mena, A.; Holcroft, K.; Gambetta, M. C.; Lim, F.; Farley, E.; Stein, N.; Haddad, A.; Chauss, D.; Mutlu, A. S.; Wang, M. C.; Young, N. D.; Hildebrandt, E.; Cheng, H. H.; Knight, C. J.; Burnham, T. L. U.; Hovel, K. A.; Beel, A. J.; Mattei, P.-J.; Kornberg, R. D.; Warren, W. C.; Cary, G.; Gómez-Skarmeta, J. L.; Hinman, V.; Lindblad-Toh, K.; Di Palma, F.; Maeshima, K.; Multani, A. S.; Pathak, S.; Nel-Themaat, L.; Behringer, R. R.; Kaur, P.; Medema, R. H.; van Steensel, B.; de Wit, E.; Onuchic, J. N.; Di Pierro, M.; Lieberman Aiden, E.; Rowland, B. D. 3D Genomics across the Tree of Life Reveals Condensin II as a Determinant of Architecture Type. Science 2021, 372 (6545), 984–989. https://doi.org/10.1126/science.abe2218.

  17. Young, N. D.; Stroehlein, A. J.; Kinkar, L.; Wang, T.; Sohn, W.-M.; Chang, B. C. H.; Kaur, P.; Weisz, D.; Dudchenko, O.; Aiden, E. L.; Korhonen, P. K.; Gasser, R. B. High-Quality Reference Genome for Clonorchis Sinensis. Genomics 2021, 113 (3), 1605–1615. https://doi.org/10.1016/j.ygeno.2021.03.001.

  18. Colella, J. P.; Tigano, A.; Dudchenko, O.; Omer, A. D.; Khan, R.; Bochkov, I. D.; Aiden, E. L.; MacManes, M. D. Limited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice. Journal of Heredity 2021, 112 (3), 286–302. https://doi.org/10.1093/jhered/esab009.

  19. Jones, B. M.; Rubin, B. E. R.; Dudchenko, O.; Kapheim, K. M.; Wyman, E. S.; Hilaire, B. G. S.; Liu, W.; Parsons, L. R.; Jackson, S. R.; Goodwin, K.; Davidson, S. M.; Kingwell, C. J.; Webb, A. E.; Otárola, M. F.; Pham, M.; Omer, A. D.; Weisz, D.; Schraiber, J.; Villanea, F.; Wcislo, W. T.; Paxton, R. J.; Hunt, B. G.; Aiden, E. L.; Kocher, S. D. Convergent Selection on Juvenile Hormone Signaling Is Associated with the Evolution of Eusociality in Bees; 2021; p 2021.04.14.439731. https://doi.org/10.1101/2021.04.14.439731.

  20. Edwards, R. J.; Field, M. A.; Ferguson, J. M.; Dudchenko, O.; Keilwagen, J.; Rosen, B. D.; Johnson, G. S.; Rice, E. S.; Hillier, L. D.; Hammond, J. M.; Towarnicki, S. G.; Omer, A.; Khan, R.; Skvortsova, K.; Bogdanovic, O.; Zammit, R. A.; Aiden, E. L.; Warren, W. C.; Ballard, J. W. O. Chromosome-Length Genome Assembly and Structural Variations of the Primal Basenji Dog (Canis Lupus Familiaris) Genome. BMC Genomics 2021, 22 (1), 188. https://doi.org/10.1186/s12864-021-07493-6.

  21. Tigano, A.; Khan, R.; Omer, A. D.; Weisz, D.; Dudchenko, O.; Multani, A. S.; Pathak, S.; Behringer, R. R.; Aiden, E. L.; Fisher, H.; MacManes, M. D. Chromosome Size Affects Sequence Divergence between Species through the Interplay of Recombination and Selection; 2021; p 2021.01.15.426870. https://doi.org/10.1101/2021.01.15.426870.

  22. Kaur, P.; Lui, C.; Dudchenko, O.; Nandety, R. S.; Hurgobin, B.; Pham, M.; Lieberman Aiden, E.; Wen, J.; Mysore, K. S. Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago Truncatula Cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly. International Journal of Molecular Sciences 2021, 22 (9), 4326. https://doi.org/10.3390/ijms22094326.

  23. Yadav, S.; Dudchenko, O.; Esvaran, M.; Rosen, B. D.; Field, M. A.; Skvortsova, K.; Edwards, R. J.; Gopalakrishnan, S.; Keilwagen, J.; Cochran, B. J.; Manandhar, B.; Bucknall, M.; Bustamante, S.; Rasmussen, J. A.; Melvin, R. G.; Omer, A.; Colaric, Z.; Chan, E. K. F.; Minoche, A. E.; Smith, T. P. L.; Gilbert, M. T. P.; Bogdanovic, O.; Zammit, R. A.; Thomas, T.; Aiden, E. L.; Ballard, J. W. O. Desert Dingo (Canis Lupus Dingo) Genome Provides Insights into Their Role in the Australian Ecosystem; 2020; p 2020.11.15.384057. https://doi.org/10.1101/2020.11.15.384057.

  24. Colella, J. P.; Tigano, A.; Dudchenko, O.; Omer, A. D.; Khan, R.; Bochkov, I. D.; Aiden, E. L.; MacManes, M. D. Multiple Evolutionary Pathways to Achieve Thermal Adaptation in Small Mammals. bioRxiv 2020, 2020.06.29.178392. https://doi.org/10.1101/2020.06.29.178392.

  25. Humble, E.; Dobrynin, P.; Senn, H.; Chuven, J.; Scott, A. F.; Mohr, D. W.; Dudchenko, O.; Omer, A. D.; Colaric, Z.; Lieberman Aiden, E.; Al Dhaheri, S. S.; Wildt, D.; Oliaji, S.; Tamazian, G.; Pukazhenthi, B.; Ogden, R.; Koepfli, K.-P. Chromosomal-Level Genome Assembly of the Scimitar-Horned Oryx: Insights into Diversity and Demography of a Species Extinct in the Wild. Mol Ecol Resour 2020. https://doi.org/10.1111/1755-0998.13181.

  26. Kenny, N. J.; McCarthy, S. A.; Dudchenko, O.; James, K.; Betteridge, E.; Corton, C.; Dolucan, J.; Mead, D.; Oliver, K.; Omer, A. D.; Pelan, S.; Ryan, Y.; Sims, Y.; Skelton, J.; Smith, M.; Torrance, J.; Weisz, D.; Wipat, A.; Aiden, E. L.; Howe, K.; Williams, S. T. The Gene-Rich Genome of the Scallop Pecten Maximus. Gigascience 2020, 9 (5). https://doi.org/10.1093/gigascience/giaa037.

  27. Field, M. A.; Rosen, B. D.; Dudchenko, O.; Chan, E. K. F.; Minoche, A. E.; Edwards, R. J.; Barton, K.; Lyons, R. J.; Tuipulotu, D. E.; Hayes, V. M.; D. Omer, A.; Colaric, Z.; Keilwagen, J.; Skvortsova, K.; Bogdanovic, O.; Smith, M. A.; Aiden, E. L.; Smith, T. P. L.; Zammit, R. A.; Ballard, J. W. O. Canfam_GSD: De Novo Chromosome-Length Genome Assembly of the German Shepherd Dog (Canis Lupus Familiaris) Using a Combination of Long Reads, Optical Mapping, and Hi-C. Gigascience 2020, 9 (4). https://doi.org/10.1093/gigascience/giaa027.

  28. Mead, D.; Hailer, F.; Chadwick, E.; Portela Miguez, R.; Smith, M.; Corton, C.; Oliver, K.; Skelton, J.; Betteridge, E.; Doulcan, J. D.; Dudchenko, O.; Omer, A.; Weisz, D.; Lieberman Aiden, E.; McCarthy, S.; Howe, K.; Sims, Y.; Torrance, J.; Tracey, A.; Challis, R.; Durbin, R.; Blaxter, M. The Genome Sequence of the Eurasian River Otter, Lutra Lutra Linnaeus 1758. Wellcome Open Res 2020, 5, 33. https://doi.org/10.12688/wellcomeopenres.15722.1.

  29. Mead, D.; Fingland, K.; Cripps, R.; Portela Miguez, R.; Smith, M.; Corton, C.; Oliver, K.; Skelton, J.; Betteridge, E.; Dolucan, J.; Dudchenko, O.; Omer, A. D.; Weisz, D.; Lieberman Aiden, E.; Fedrigo, O.; Mountcastle, J.; Jarvis, E.; McCarthy, S. A.; Sims, Y.; Torrance, J.; Tracey, A.; Howe, K.; Challis, R.; Durbin, R.; Blaxter, M. The Genome Sequence of the Eurasian Red Squirrel, Sciurus Vulgaris Linnaeus 1758. Wellcome Open Research 2020, 5, 18. https://doi.org/10.12688/wellcomeopenres.15679.1.

  30. Bertioli, D. J.; Jenkins, J.; Clevenger, J.; Dudchenko, O.; Gao, D.; Seijo, G.; Leal-Bertioli, S. C. M.; Ren, L.; Farmer, A. D.; Pandey, M. K.; Samoluk, S. S.; Abernathy, B.; Agarwal, G.; Ballén-Taborda, C.; Cameron, C.; Campbell, J.; Chavarro, C.; Chitikineni, A.; Chu, Y.; Dash, S.; Baidouri, M. E.; Guo, B.; Huang, W.; Kim, K. D.; Korani, W.; Lanciano, S.; Lui, C. G.; Mirouze, M.; Moretzsohn, M. C.; Pham, M.; Shin, J. H.; Shirasawa, K.; Sinharoy, S.; Sreedasyam, A.; Weeks, N. T.; Zhang, X.; Zheng, Z.; Sun, Z.; Froenicke, L.; Aiden, E. L.; Michelmore, R.; Varshney, R. K.; Holbrook, C. C.; Cannon, E. K. S.; Scheffler, B. E.; Grimwood, J.; Ozias-Akins, P.; Cannon, S. B.; Jackson, S. A.; Schmutz, J. The Genome Sequence of Segmental Allotetraploid Peanut Arachis Hypogaea. Nat Genet 2019, 51 (5), 877–884. https://doi.org/10.1038/s41588-019-0405-z.

  31. Dudchenko, O.; Pham, M.; Lui, C.; Batra, S. S.; Hoeger, M.; Nyquist, S. K.; Durand, N. C.; Shamim, M. S.; Machol, I.; Erskine, W.; Aiden, E. L.; Kaur, P. Hi-C Yields Chromosome-Length Scaffolds for a Legume Genome, Trifolium Subterraneum. bioRxiv 2018, 473553. https://doi.org/10.1101/473553.

  32. Matthews, B. J.; Dudchenko, O.; Kingan, S. B.; Koren, S.; Antoshechkin, I.; Crawford, J. E.; Glassford, W. J.; Herre, M.; Redmond, S. N.; Rose, N. H.; Weedall, G. D.; Wu, Y.; Batra, S. S.; Brito-Sierra, C. A.; Buckingham, S. D.; Campbell, C. L.; Chan, S.; Cox, E.; Evans, B. R.; Fansiri, T.; Filipović, I.; Fontaine, A.; Gloria-Soria, A.; Hall, R.; Joardar, V. S.; Jones, A. K.; Kay, R. G. G.; Kodali, V. K.; Lee, J.; Lycett, G. J.; Mitchell, S. N.; Muehling, J.; Murphy, M. R.; Omer, A. D.; Partridge, F. A.; Peluso, P.; Aiden, A. P.; Ramasamy, V.; Rašić, G.; Roy, S.; Saavedra-Rodriguez, K.; Sharan, S.; Sharma, A.; Smith, M. L.; Turner, J.; Weakley, A. M.; Zhao, Z.; Akbari, O. S.; Black, W. C.; Cao, H.; Darby, A. C.; Hill, C. A.; Johnston, J. S.; Murphy, T. D.; Raikhel, A. S.; Sattelle, D. B.; Sharakhov, I. V.; White, B. J.; Zhao, L.; Aiden, E. L.; Mann, R. S.; Lambrechts, L.; Powell, J. R.; Sharakhova, M. V.; Tu, Z.; Robertson, H. M.; McBride, C. S.; Hastie, A. R.; Korlach, J.; Neafsey, D. E.; Phillippy, A. M.; Vosshall, L. B. Improved Reference Genome of Aedes Aegypti Informs Arbovirus Vector Control. Nature 2018, 563 (7732), 501–507. https://doi.org/10.1038/s41586-018-0692-z.

  33. Dudchenko, O.; Shamim, M. S.; Batra, S. S.; Durand, N. C.; Musial, N. T.; Mostofa, R.; Pham, M.; Hilaire, B. G. S.; Yao, W.; Stamenova, E.; Hoeger, M.; Nyquist, S. K.; Korchina, V.; Pletch, K.; Flanagan, J. P.; Tomaszewicz, A.; McAloose, D.; Estrada, C. P.; Novak, B. J.; Omer, A. D.; Aiden, E. L. The Juicebox Assembly Tools Module Facilitates de Novo Assembly of Mammalian Genomes with Chromosome-Length Scaffolds for under $1000. bioRxiv 2018, 254797. https://doi.org/10.1101/254797.

  34. Dudchenko, O.; Batra, S. S.; Omer, A. D.; Nyquist, S. K.; Hoeger, M.; Durand, N. C.; Shamim, M. S.; Machol, I.; Lander, E. S.; Aiden, A. P.; Aiden, E. L. De Novo Assembly of the Aedes Aegypti Genome Using Hi-C Yields Chromosome-Length Scaffolds. Science 2017, 356 (6333), 92–95. https://doi.org/10.1126/science.aal3327

SELECT PAPERS CITING UNPUBLISHED DNA ZOO DATA

  1. Damas, J., Corbo, M., Kim, J., Turner-Maier, J., Farré, M., Larkin, D.M., Ryder, O.A., Steiner, C., Houck, M.L., Hall, S., Shiue, L., Thomas, S., Swale, T., Daly, M., Korlach, J., Uliano-Silva, M., Mazzoni, C.J., Birren, B.W., Genereux, D.P., Johnson, J., Lindblad-Toh, K., Karlsson, E.K., Nweeia, M.T., Johnson, R.N., Lewin, H.A., Andrews, G., Armstrong, J.C., Bianchi, M., Birren, B.W., Bredemeyer, K.R., Breit, A.M., Christmas, M.J., Clawson, H., Damas, J., Palma, F.D., Diekhans, M., Dong, M.X., Eizirik, E., Fan, K., Fanter, C., Foley, N.M., Forsberg-Nilsson, K., Garcia, C.J., Gatesy, J., Gazal, S., Genereux, D.P., Goodman, L., Grimshaw, J., Halsey, M.K., Harris, A.J., Hickey, G., Hiller, M., Hindle, A.G., Hubley, R.M., Hughes, G.M., Johnson, J., Juan, D., Kaplow, I.M., Karlsson, E.K., Keough, K.C., Kirilenko, B., Koepfli, K.-P., Korstian, J.M., Kowalczyk, A., Kozyrev, S.V., Lawler, A.J., Lawless, C., Lehmann, T., Levesque, D.L., Lewin, H.A., Li, X., Lind, A., Lindblad-Toh, K., Mackay-Smith, A., Marinescu, V.D., Marques-Bonet, T., Mason, V.C., Meadows, J.R.S., Meyer, W.K., Moore, J.E., Moreira, L.R., Moreno-Santillan, D.D., Morrill, K.M., Muntané, G., Murphy, W.J., Navarro, A., Nweeia, M., Ortmann, S., Osmanski, A., Paten, B., Paulat, N.S., Pfenning, A.R., Phan, B.N., Pollard, K.S., Pratt, H.E., Ray, D.A., Reilly, S.K., Rosen, J.R., Ruf, I., Ryan, L., Ryder, O.A., Sabeti, P.C., Schäffer, D.E., Serres, A., Shapiro, B., Smit, A.F.A., Springer, M., Srinivasan, C., Steiner, C., Storer, J.M., Sullivan, K.A.M., Sullivan, P.F., Sundström, E., Supple, M.A., Swofford, R., Talbot, J.-E., Teeling, E., Turner-Maier, J., Valenzuela, A., Wagner, F., Wallerman, O., Wang, C., Wang, J., Weng, Z., Wilder, A.P., Wirthlin, M.E., Xue, J.R., Zhang, X., 2022. Evolution of the ancestral mammalian karyotype and syntenic regions. Proceedings of the National Academy of Sciences 119, e2209139119. https://doi.org/10.1073/pnas.2209139119

  2. Li, L., Shen, F., Jie, X., Zhang, L., Yan, G., Wu, H., Huang, Y., Hou, R., Yue, B., Zhang, X., 2022. Comparative Transcriptomics and Methylomics Reveal Adaptive Responses of Digestive and Metabolic Genes to Dietary Shift in Giant and Red Pandas. Genes (Basel) 13. https://doi.org/10.3390/genes13081446

  3. Cappelletti, E., Piras, F.M., Sola, L., Santagostino, M., Abdelgadir, W.A., Raimondi, E., Lescai, F., Nergadze, S.G., Giulotto, E., 2022. Robertsonian fusion and centromere repositioning contributed to the formation of satellite-free centromeres during the evolution of zebras. Mol Biol Evol msac162. https://doi.org/10.1093/molbev/msac162

  4. Winter, S., Coimbra, R.T.F., Helsen, P., Janke, A., 2022. A chromosome-scale genome assembly of the okapi (Okapia johnstoni). Journal of Heredity esac033. https://doi.org/10.1093/jhered/esac033

  5. Barrett, J.H., Khamaiko, N., Ferrari, G., Cuevas, A., Kneale, C., Hufthammer, A.K., Pálsdóttir, A.H., Star, B., 2022. Walruses on the Dnieper: new evidence for the intercontinental trade of Greenlandic ivory in the Middle Ages. Proceedings of the Royal Society B: Biological Sciences 289, 20212773. https://doi.org/10.1098/rspb.2021.2773

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